Bioinformatics
How to install Velvet on UBUNTU
홍조
2011. 6. 2. 15:36
Velvet : Sequence assembler for very short reads
$ sudo apt-get install zlib1g-dev texlive-latex-base
$ cd /to/velvet
$ make 'VELVET_DIR=/share/velvet' 'MAXKMERLENGTH=96' 'LONGSEQUENCES=1' 'CATEGORIES=96' 'BIGASSEMBLY=1' 'OPENMP=1'
$ cd /to/oases
$ make 'VELVET_DIR=/share/velvet' 'MAXKMERLENGTH=96' 'LONGSEQUENCES=1'
$ /etc/profile에 경로를 추가한다.
$ velveth, velvetg, oases 실행
$ cd /to/velvet
$ make 'VELVET_DIR=/share/velvet' 'MAXKMERLENGTH=96' 'LONGSEQUENCES=1' 'CATEGORIES=96' 'BIGASSEMBLY=1' 'OPENMP=1'
$ cd /to/oases
$ make 'VELVET_DIR=/share/velvet' 'MAXKMERLENGTH=96' 'LONGSEQUENCES=1'
$ /etc/profile에 경로를 추가한다.
$ velveth, velvetg, oases 실행
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